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Our objective is to discover languages and tools for biology that scientists will find indispensable for their own work, and that directly support communication and collaboration. Such languages and tools are widely used in all of the engineering disciplines--circuit diagrams for electrical engineers, hardware description languages for integrated circuit designers, and 3D mechanical models for mechanical engineers. For biologists, we are developing a ubiquitous laboratory assistant, based on a formal language for describing laboratory procedures, that has the potential to simplify laboratory work, foster new forms of collaboration, and promote the application of computational tools, while helping to train biologists in the skills and standards that will be needed in the laboratories of the future. Labscape is a ubiquitous software and computer hardware system that is always at the biologist’s fingertips, anticipates what will happen next in the lab, and gathers and organizes data as laboratory work is performed.Laboratory environments are frequently reconfigured with many shared
devices and work areas, and with people on the move. The lab worker’s
experience must remain consistent in this dynamic environment, without the
need to own, reconfigure or reprogram devices. At the same time, we
must discover a paradigm for human-computer interaction that is
appropriate for experiment capture in a smart laboratory environment. The
Labscape project is in close collaboration with the Cell Systems
Initiative of UW's Department of Bioengineering, local biotechnology companies,
and with the department's Portolano Program.
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Papers |
Arnstein, L., Borriello, G., Consolvo, S., Hung, C., Su, J. Labscape: A Smart Environment for the Cell Biology Laboratory, IEEE Pervasive Computing Magazine, vol. 1, no. 3, July-September 2002, IEEE Computer Society, NY, NY Arnstein, L. F., Grimm, R., Hung, C, Hee, J., LaMarca, A., Sigurdsson, S. B., Su, J., Borriello, G., Systems Support for Ubiquitous Computing: A Case Study of Two Implementations of Labscape, Proceedings of the First International Conference on Pervasive Computing, 2002, Springer-Verlag, Germany S. Consolvo, L. Arnstein, R. Franza, User Study Techniques in the Design and Evaluation of a Ubicomp Environment. Proceedings of the Fourth International Conference on Ubiquitous Computing, September 2002, Springer-Verlag, Germany Arnstein, L. F., Sigurdsson, S., Franza, R., Ubiquitous Computing in the Biology Laboratory, Journal of Lab Automation (JALA). vol 6, no. 1, March 2001 |
Presentations |
DOE SciDAC Workshop on Scientific Visualization, Salt Lake City, September 2002. NSF Workshop on Advanced Instrumentation for the New Millenium -- Biological Sciences, December 2001 Stanford University Human Computer Interaction. Seminar A Ubiquitous Laboratory Assistant for Cell Biology. (Web page), (Slides), (On-Line Video), November 1, 2001 CHI 2001 Workshop Presentation on "Building the Ubiquitous Computing User Experience". Breaking Down Barriers in the Biology Lab, April 2, 2001 LabAutomation 2001. Session on Emerging Informatics Technologies. "Ubiquitous Computing in the Biology Laboratory", January 30, 2001 SuperComputing 2000 Panel, "Convergence of the Extremes". Computer Science & Engineering Colloquium, 10/10/00, on demand video or Slides . Intel Computing and Communication Continuum, March 2000. Talk by Dr. Bob Franza: Getting Real at CSI The Sixth Annual Workshop on Frontiers in Distributed Information Systems , June 2000, Presentation by Larry Arnstein: Invisible Computing in the Biology Laboratory |
Artifacts |
Interface Video HTML version of Labscape (developed by CSI, prototype only!) |
Collaborators |
Intel Research laboratories at Seattle. See Intel's Labscape project site. The Portolano Project and all the great students and faculty |
Press |
University of Washington Engineering TREND newsletter, August 30, 2002, Article on High School application of Labscape. Pacific Northwest GigaPop Article on Labscape at CSI Genome Technology Magazine Article, April 2002 |
Funding and Support |
NSF ITR '01. Ubiquitous Computing for Experiment Capture in the Biology Laboratory -- awarded Oct 1, 2001. Intel Research Council DARPA Expedition into Ubiquitous Computing NIH NIGMS |